STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0890PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: reu:Reut_A0929 bacteriocin-processing peptidase. (771 aa)    
Predicted Functional Partners:
Slin_0889
Hypothetical protein; KEGG: bxe:Bxe_C1144 anibiotic ABC transporter efflux pump.
 
 
 0.966
Slin_0782
KEGG: hypothetical protein.
 
 
 0.860
Slin_4232
KEGG: hypothetical protein.
 
 
 0.860
Slin_4700
KEGG: hypothetical protein.
 
 
 0.860
Slin_0774
PFAM: Vitamin K epoxide reductase; KEGG: vsp:VS_II1178 putative outer membrane protein.
 
     0.771
Slin_4705
PFAM: Lanthionine synthetase C family protein.
 
   
 0.761
Slin_4704
PFAM: Lantibiotic dehydratase domain protein; KEGG: hypothetical protein.
  
     0.712
Slin_0903
PFAM: Lantibiotic dehydratase domain protein; KEGG: hypothetical protein.
 
     0.708
Slin_0891
PFAM: glycosyl transferase family 2; KEGG: cja:CJA_3568 hypothetical protein.
 
    0.706
Slin_2131
PFAM: Lantibiotic dehydratase domain protein; KEGG: hypothetical protein.
  
     0.695
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.