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Slin_0895 protein (Spirosoma linguale) - STRING interaction network
"Slin_0895" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0895TonB-dependent receptor plug (806 aa)    
Predicted Functional Partners:
Slin_0894
2OG-Fe(II) oxygenase (328 aa)
              0.724
Slin_0203
TonB-dependent receptor plug (1047 aa)
   
          0.711
Slin_0896
Hypothetical protein (346 aa)
              0.700
Slin_4879
Hypothetical protein (170 aa)
   
          0.697
Slin_6053
TonB-dependent receptor plug (1006 aa)
   
          0.696
Slin_0897
Radical SAM protein (454 aa)
              0.694
Slin_6501
Surface antigen (D15) (808 aa)
   
          0.692
Slin_6636
TonB-dependent receptor plug (992 aa)
   
          0.690
Slin_1304
Hypothetical protein (301 aa)
   
          0.687
Slin_0206
TonB-dependent receptor plug (1064 aa)
   
          0.685
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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