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Slin_0897 protein (Spirosoma linguale) - STRING interaction network
"Slin_0897" - Radical SAM protein in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0897Radical SAM protein (454 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (339 aa)
         
  0.902
Slin_0896
Hypothetical protein (346 aa)
              0.850
Slin_0901
Radical SAM protein (414 aa)
 
          0.714
Slin_0895
TonB-dependent receptor plug (806 aa)
              0.694
Slin_0890
ABC transporter (771 aa)
 
          0.688
Slin_0898
Hypothetical protein (57 aa)
              0.596
Slin_0210
K channel inward rectifier domain-containing protein (330 aa)
   
          0.591
Slin_0894
2OG-Fe(II) oxygenase (328 aa)
              0.590
Slin_6438
Iron-dependent peroxidase-like protein (484 aa)
   
          0.560
Slin_5169
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (1029 aa)
         
  0.552
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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