STRINGSTRING
Slin_0977 protein (Spirosoma linguale) - STRING interaction network
"Slin_0977" - Peroxiredoxin in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0977Peroxiredoxin (149 aa)    
Predicted Functional Partners:
Slin_0646
Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen (184 aa)
 
 
  0.889
rpmI
50S ribosomal protein L35 (64 aa)
     
        0.786
Slin_5849
Hypothetical protein (282 aa)
     
        0.747
Slin_0978
Peptidase M23 (689 aa)
              0.745
Slin_1131
NAD-dependent epimerase/dehydratase (315 aa)
     
        0.736
Slin_6071
Hypothetical protein (303 aa)
   
        0.735
Slin_0847
Hypothetical protein (307 aa)
   
        0.735
Slin_5941
FAD-dependent pyridine nucleotide-disulfide oxidoreductase (526 aa)
     
   
  0.689
Slin_6383
Thioredoxin (101 aa)
   
 
  0.674
Slin_0530
Thioredoxin (114 aa)
   
 
  0.674
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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