STRINGSTRING
Slin_0978 protein (Spirosoma linguale) - STRING interaction network
"Slin_0978" - Peptidase M23 in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0978Peptidase M23 (689 aa)    
Predicted Functional Partners:
Slin_1641
Peptidase M23 (286 aa)
   
          0.770
Slin_0979
Fumarylacetoacetate hydrolase (212 aa)
              0.750
Slin_0977
Peroxiredoxin (149 aa)
              0.745
Slin_6234
Peptidase M23 (446 aa)
   
          0.735
Slin_4394
Carboxyl-terminal protease (575 aa)
 
 
  0.635
Slin_3923
Carboxyl-terminal protease (557 aa)
 
 
  0.610
Slin_0976
Transketolase (285 aa)
              0.515
Slin_5948
Hypothetical protein (204 aa)
   
          0.507
Slin_1599
ATP-dependent Clp protease adaptor protein ClpS (92 aa)
   
          0.504
Slin_6521
Carboxyl-terminal protease (709 aa)
   
 
  0.480
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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