STRINGSTRING
Slin_0987 protein (Spirosoma linguale) - STRING interaction network
"Slin_0987" - Preprotein translocase subunit SecG in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0987Preprotein translocase subunit SecG (134 aa)    
Predicted Functional Partners:
Slin_2049
Hypothetical protein (455 aa)
   
          0.658
Slin_5939
Biopolymertransporter ExbD/TolR (130 aa)
   
          0.650
Slin_0988
Hypothetical protein (280 aa)
              0.649
Slin_0992
Surface antigen (D15) (875 aa)
 
          0.639
Slin_5616
Hypothetical protein (451 aa)
   
          0.634
Slin_2038
Hypothetical protein (1024 aa)
   
          0.617
Slin_1309
Hypothetical protein (614 aa)
   
          0.601
Slin_0989
Hypothetical protein (188 aa)
 
          0.572
Slin_3057
Hypothetical protein (285 aa)
   
          0.521
Slin_1136
TonB-dependent receptor (998 aa)
   
          0.521
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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