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Slin_0990 protein (Spirosoma linguale) - STRING interaction network
"Slin_0990" - Fis family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0990Fis family transcriptional regulator (460 aa)    
Predicted Functional Partners:
Slin_0989
Hypothetical protein (188 aa)
              0.880
Slin_0631
RNA polymerase sigma-54 subunit RpoN (483 aa)
   
     
  0.857
miaB
MiaB family RNA modification protein; Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine (513 aa)
              0.725
Slin_0988
Hypothetical protein (280 aa)
              0.601
Slin_0987
Preprotein translocase subunit SecG (134 aa)
              0.442
Slin_0751
Fis family transcriptional regulator (490 aa)
 
 
 
0.442
Slin_4586
Fis family transcriptional regulator (456 aa)
 
 
 
0.436
Slin_3124
Hypothetical protein (251 aa)
   
          0.435
Slin_2347
Fis family transcriptional regulator (456 aa)
 
 
 
0.430
Slin_3143
Fis family transcriptional regulator (454 aa)
 
 
 
0.419
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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