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Slin_1000 protein (Spirosoma linguale) - STRING interaction network
"Slin_1000" - GHMP kinase domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1000GHMP kinase domain-containing protein (370 aa)    
Predicted Functional Partners:
Slin_1235
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer (387 aa)
 
  0.990
Slin_3046
Aldose 1-epimerase (345 aa)
   
  0.987
Slin_5839
UDP-glucose 4-epimerase (343 aa)
   
 
  0.941
Slin_2977
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer (397 aa)
 
 
  0.906
Slin_4447
Aldose 1-epimerase (290 aa)
   
 
  0.880
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P) (389 aa)
   
   
 
0.859
Slin_1001
Hypothetical protein (67 aa)
              0.859
Slin_1002
Glucose/galactose transporter (406 aa)
   
   
  0.769
Slin_2419
Beta-galactosidase (686 aa)
 
   
  0.630
Slin_2927
Glycoside hydrolase family protein (619 aa)
 
   
  0.622
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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