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Slin_1002 protein (Spirosoma linguale) - STRING interaction network
"Slin_1002" - Glucose/galactose transporter in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1002Glucose/galactose transporter (406 aa)    
Predicted Functional Partners:
Slin_1000
GHMP kinase domain-containing protein (370 aa)
   
   
  0.769
Slin_0310
Short-chain dehydrogenase/reductase SDR (261 aa)
 
   
  0.760
Slin_1001
Hypothetical protein (67 aa)
              0.759
Slin_1807
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose (104 aa)
   
   
  0.708
Slin_4785
Altronate dehydratase (551 aa)
   
        0.642
Slin_0416
Altronate dehydratase (582 aa)
   
        0.642
Slin_0412
Amidohydrolase 2 (274 aa)
 
        0.573
Slin_1003
Oxidoreductase domain-containing protein (458 aa)
         
  0.516
Slin_2290
Major facilitator superfamily protein (426 aa)
   
   
  0.460
Slin_1007
Short-chain dehydrogenase/reductase SDR (233 aa)
   
   
  0.406
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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