STRINGSTRING
Slin_1050 protein (Spirosoma linguale) - STRING interaction network
"Slin_1050" - Beta-lactamase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1050Beta-lactamase (255 aa)    
Predicted Functional Partners:
Slin_2830
PHP domain-containing protein (577 aa)
     
      0.980
Slin_1049
ABC transporter (496 aa)
   
        0.653
Slin_1048
Inner-membrane translocator (328 aa)
              0.597
Slin_4391
Radical SAM protein (327 aa)
   
   
  0.515
Slin_0858
Radical SAM protein (349 aa)
   
   
  0.515
Slin_0240
Radical SAM protein (340 aa)
   
   
  0.515
Slin_0543
DNA polymerase I (1024 aa)
              0.515
Slin_2970
Protein serine/threonine phosphatase (273 aa)
 
   
  0.503
Slin_4077
Nucleotide sugar dehydrogenase (444 aa)
     
      0.503
Slin_1283
Protein serine/threonine phosphatase (482 aa)
 
   
  0.491
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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