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Slin_1055 protein (Spirosoma linguale) - STRING interaction network
"Slin_1055" - Histidine triad in Spirosoma linguale
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1055Histidine triad (HIT) protein (130 aa)    
Predicted Functional Partners:
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3’terminus. GreA releases sequences of 2 to 3 nucleotides (157 aa)
              0.712
Slin_6077
PpiC-type peptidyl-prolyl cis-trans isomerase (133 aa)
   
 
  0.550
Slin_0807
PpiC-type peptidyl-prolyl cis-trans isomerase (797 aa)
   
 
  0.550
Slin_0806
PpiC-type peptidyl-prolyl cis-trans isomerase (458 aa)
   
 
  0.550
Slin_4049
Histidine triad (HIT) protein (289 aa)
   
          0.517
hisI
phosphoribosyl-ATP diphosphatase (202 aa)
              0.515
Slin_5724
TIR protein (942 aa)
   
 
  0.512
dnaK
Chaperone protein DnaK; Acts as a chaperone (644 aa)
   
 
  0.512
Slin_1429
DnaK-type molecular chaperone DnaK (428 aa)
   
 
  0.512
Slin_2483
Histone deacetylase (300 aa)
   
    0.503
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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