STRINGSTRING
Slin_1089 protein (Spirosoma linguale) - STRING interaction network
"Slin_1089" - Major facilitator superfamily protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1089Major facilitator superfamily protein (509 aa)    
Predicted Functional Partners:
Slin_2883
Alpha amylase (630 aa)
 
   
  0.797
Slin_0058
Glycoside hydrolase (693 aa)
 
          0.705
Slin_2541
Alpha amylase (467 aa)
 
          0.665
Slin_1088
PfkB domain-containing protein (315 aa)
 
     
  0.638
Slin_3184
Sugar transporter (441 aa)
 
  0.632
Slin_1090
Outer membrane protein/protective antigen OMA87-like protein (478 aa)
              0.626
Slin_1747
Glycoside hydrolase family protein (778 aa)
 
        0.593
Slin_0543
DNA polymerase I (1024 aa)
 
   
  0.566
Slin_5082
Zn-dependent aminopeptidase (792 aa)
 
  0.543
Slin_2109
Esterase (421 aa)
 
 
      0.541
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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