STRINGSTRING
Slin_1134 protein (Spirosoma linguale) - STRING interaction network
"Slin_1134" - Periplasmic binding protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1134Periplasmic binding protein (246 aa)    
Predicted Functional Partners:
rnr
Ribonuclease R; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (825 aa)
     
      0.866
Slin_1565
Transporter permease (355 aa)
 
 
  0.798
Slin_2256
methylmalonyl-CoA mutase (1110 aa)
 
     
  0.758
Slin_1566
Periplasmic binding protein (289 aa)
   
          0.745
Slin_1135
Hypothetical protein (284 aa)
              0.636
Slin_1567
TonB-dependent receptor (780 aa)
 
   
  0.579
Slin_3791
AMP-dependent synthetase and ligase (867 aa)
     
 
  0.542
Slin_1564
ABC transporter (259 aa)
 
     
  0.537
Slin_1136
TonB-dependent receptor (998 aa)
              0.536
Slin_5755
TonB-dependent siderophore receptor (793 aa)
   
   
  0.515
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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