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Slin_1136 protein (Spirosoma linguale) - STRING interaction network
"Slin_1136" - TonB-dependent receptor in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1136TonB-dependent receptor (998 aa)    
Predicted Functional Partners:
Slin_1135
Hypothetical protein (284 aa)
              0.715
Slin_5597
Hypothetical protein (311 aa)
   
          0.700
Slin_5852
Hypothetical protein (623 aa)
   
          0.683
Slin_4064
Hypothetical protein (180 aa)
   
          0.642
Slin_1525
Hypothetical protein (855 aa)
   
          0.622
Slin_1115
Hypothetical protein (316 aa)
   
          0.619
Slin_3420
TonB-dependent receptor plug (1076 aa)
   
          0.605
Slin_1298
Hypothetical protein (434 aa)
   
          0.605
Slin_5949
Hypothetical protein (1152 aa)
   
          0.603
Slin_4973
Cytochrome C biogenesis protein transmembrane region (699 aa)
   
          0.603
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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