STRINGSTRING
Slin_1139 protein (Spirosoma linguale) - STRING interaction network
"Slin_1139" - Peptidase M42 family protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1139Peptidase M42 family protein (356 aa)    
Predicted Functional Partners:
Slin_1141
ATPase (366 aa)
              0.859
Slin_1140
Hypothetical protein (226 aa)
              0.859
Slin_1142
XRE family transcriptional regulator (141 aa)
              0.630
Slin_1138
Hypothetical protein (69 aa)
              0.625
Slin_1137
Hypothetical protein (80 aa)
              0.625
Slin_6090
Hypothetical protein (398 aa)
 
          0.622
clpP
Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (229 aa)
              0.467
Slin_5664
Cytochrome C class I (443 aa)
   
          0.452
Slin_4879
Hypothetical protein (170 aa)
   
          0.431
Slin_5962
KpsF/GutQ family protein (322 aa)
   
        0.429
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (12%) [HD]