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Slin_1142 protein (Spirosoma linguale) - STRING interaction network
"Slin_1142" - XRE family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1142XRE family transcriptional regulator (141 aa)    
Predicted Functional Partners:
Slin_1141
ATPase (366 aa)
              0.630
Slin_1140
Hypothetical protein (226 aa)
              0.630
Slin_1139
Peptidase M42 family protein (356 aa)
              0.630
clpP
Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (229 aa)
              0.619
Slin_2001
Hypothetical protein (500 aa)
   
          0.514
Slin_2733
Hypothetical protein (570 aa)
   
          0.513
Slin_2732
Hypothetical protein (449 aa)
   
          0.473
Slin_1138
Hypothetical protein (69 aa)
              0.470
Slin_1137
Hypothetical protein (80 aa)
              0.470
Slin_0456
Glycoside hydrolase family protein (462 aa)
   
          0.468
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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