STRINGSTRING
Slin_1153 protein (Spirosoma linguale) - STRING interaction network
"Slin_1153" - Class III aminotransferase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1153Class III aminotransferase (377 aa)    
Predicted Functional Partners:
argC
N-acetyl-gamma-glutamyl-phosphate reductase (327 aa)
 
 
  0.996
Slin_0306
Peptidase M20 (360 aa)
 
 
  0.985
argB
Acetylglutamate kinase (260 aa)
   
  0.983
Slin_1156
Aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain-containing protein (320 aa)
   
  0.975
Slin_0407
Argininosuccinate synthase (400 aa)
 
   
  0.950
argH
Argininosuccinate lyase (445 aa)
 
   
  0.947
Slin_0026
Hypothetical protein (235 aa)
 
          0.858
Slin_1155
Hypothetical protein (116 aa)
              0.767
Slin_1154
Hypothetical protein (82 aa)
              0.767
Slin_4514
Aspartate kinase (818 aa)
   
   
  0.706
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (8%) [HD]