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Slin_1204 protein (Spirosoma linguale) - STRING interaction network
"Slin_1204" - RND family efflux transporter MFP subunit in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1204RND family efflux transporter MFP subunit (471 aa)    
Predicted Functional Partners:
Slin_5121
ABC transporter (240 aa)
 
 
  0.991
Slin_4653
Hypothetical protein (413 aa)
 
 
  0.954
Slin_0794
Hypothetical protein (412 aa)
 
 
  0.954
Slin_2349
Hypothetical protein (415 aa)
 
 
  0.916
Slin_1203
Outer membrane efflux protein (497 aa)
 
 
  0.894
Slin_5020
Hypothetical protein (418 aa)
 
 
  0.831
Slin_2350
ABC transporter (220 aa)
 
 
  0.696
Slin_2692
Outer membrane efflux protein (442 aa)
 
 
  0.669
Slin_6590
NodT family RND efflux system outer membrane lipoprotein (484 aa)
 
 
  0.665
Slin_5197
NodT family RND efflux system outer membrane lipoprotein (492 aa)
   
 
  0.665
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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