STRINGSTRING
Slin_1212 protein (Spirosoma linguale) - STRING interaction network
"Slin_1212" - Endonuclease/exonuclease/phosphatase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1212Endonuclease/exonuclease/phosphatase (372 aa)    
Predicted Functional Partners:
Slin_5636
TonB-dependent receptor (793 aa)
   
          0.697
Slin_2000
XRE family transcriptional regulator (172 aa)
   
          0.669
Slin_4064
Hypothetical protein (180 aa)
   
          0.663
Slin_5436
Hypothetical protein (505 aa)
   
          0.660
Slin_2875
Hypothetical protein (843 aa)
   
          0.646
Slin_3158
Hypothetical protein (857 aa)
   
          0.644
Slin_1306
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (103 aa)
   
          0.632
Slin_3443
Hypothetical protein (952 aa)
   
          0.592
Slin_1307
Outer membrane assembly lipoprotein YfiO (299 aa)
   
          0.587
Slin_2892
Hypothetical protein (757 aa)
   
          0.582
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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