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Slin_1220 protein (Spirosoma linguale) - STRING interaction network
"Slin_1220" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1220TonB-dependent receptor plug (1137 aa)    
Predicted Functional Partners:
Slin_1221
RagB/SusD domain-containing protein (539 aa)
 
          0.951
Slin_1219
anti-FecI sigma factor FecR (333 aa)
              0.859
Slin_1165
Hypothetical protein (499 aa)
   
 
      0.827
Slin_5058
RagB/SusD domain-containing protein (493 aa)
 
     
  0.786
Slin_4380
RagB/SusD domain-containing protein (478 aa)
 
          0.778
Slin_3391
RagB/SusD domain-containing protein (507 aa)
   
          0.777
Slin_0107
RagB/SusD domain-containing protein (476 aa)
   
          0.774
Slin_6530
RagB/SusD domain-containing protein (521 aa)
   
          0.773
Slin_4041
RagB/SusD domain-containing protein (477 aa)
   
          0.772
Slin_4318
RagB/SusD domain-containing protein (481 aa)
   
          0.768
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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