STRINGSTRING
Slin_1227 protein (Spirosoma linguale) - STRING interaction network
"Slin_1227" - TonB-dependent receptor plug in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1227TonB-dependent receptor plug (923 aa)    
Predicted Functional Partners:
Slin_1226
Hypothetical protein (371 aa)
 
          0.907
Slin_1228
Hypothetical protein (253 aa)
              0.863
Slin_1225
Hypothetical protein (801 aa)
 
          0.851
Slin_2828
Hypothetical protein (364 aa)
   
          0.743
Slin_2915
Hypothetical protein (345 aa)
   
          0.722
Slin_1885
Hypothetical protein (440 aa)
   
          0.711
Slin_5341
Hypothetical protein (300 aa)
 
          0.703
Slin_3585
Hypothetical protein (324 aa)
   
          0.691
Slin_1159
Hypothetical protein (144 aa)
   
          0.684
Slin_0031
Hypothetical protein (345 aa)
   
          0.649
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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