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Slin_1233 protein (Spirosoma linguale) - STRING interaction network
"Slin_1233" - Alanine racemase domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1233Alanine racemase domain-containing protein (371 aa)    
Predicted Functional Partners:
Slin_1232
Endoribonuclease L-PSP (158 aa)
 
        0.968
Slin_3958
Peptidase M19 renal dipeptidase (362 aa)
 
          0.815
Slin_6046
D-aminoacylase domain-containing protein (530 aa)
 
          0.657
Slin_1231
Lysophospholipase L1-like protein (280 aa)
              0.582
Slin_5067
Oxidoreductase domain-containing protein (452 aa)
   
          0.575
Slin_1223
G-D-S-L family lipolytic protein (316 aa)
   
          0.545
Slin_3982
SMP-30/gluconolaconase/LRE domain-containing protein (305 aa)
 
          0.544
Slin_0813
Hypothetical protein (240 aa)
   
          0.527
Slin_0108
Hypothetical protein (668 aa)
   
          0.527
Slin_1936
Beta-lactamase (848 aa)
 
          0.522
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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