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Slin_1248 protein (Spirosoma linguale) - STRING interaction network
"Slin_1248" - LacI family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1248LacI family transcriptional regulator (334 aa)    
Predicted Functional Partners:
Slin_2649
Ribokinase (319 aa)
   
  0.721
Slin_1048
Inner-membrane translocator (328 aa)
 
   
  0.617
Slin_1049
ABC transporter (496 aa)
 
   
  0.612
Slin_0841
DeoR family transcriptional regulator (249 aa)
   
     
  0.598
Slin_1047
Periplasmic binding protein/LacI transcriptional regulator (317 aa)
 
   
  0.580
Slin_1246
PfkB domain-containing protein (342 aa)
   
   
  0.566
Slin_1088
PfkB domain-containing protein (315 aa)
 
   
  0.561
Slin_3183
PfkB domain-containing protein (297 aa)
 
   
  0.542
Slin_0739
DeoR family transcriptional regulator (250 aa)
   
     
  0.540
Slin_4421
acetoacetyl-CoA synthase (656 aa)
     
 
  0.511
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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