STRINGSTRING
Slin_1252 protein (Spirosoma linguale) - STRING interaction network
"Slin_1252" - Cell wall hydrolase/autolysin in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1252Cell wall hydrolase/autolysin (347 aa)    
Predicted Functional Partners:
Slin_4902
N-acetylmuramoyl-L-alanine amidase (282 aa)
         
    0.800
Slin_5707
Hypothetical protein (100 aa)
   
          0.673
Slin_1160
Hypothetical protein (100 aa)
   
          0.627
Slin_3543
UspA domain-containing protein (293 aa)
   
          0.626
Slin_0664
Hypothetical protein (185 aa)
   
          0.604
Slin_2352
RND family efflux transporter MFP subunit (419 aa)
   
          0.585
Slin_5520
Type 12 methyltransferase (306 aa)
   
          0.583
Slin_5708
Chaperone DnaJ domain-containing protein (301 aa)
   
          0.537
Slin_0216
Hypothetical protein (108 aa)
   
          0.537
Slin_3437
Major facilitator superfamily protein (416 aa)
   
          0.472
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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