STRINGSTRING
Slin_1263 protein (Spirosoma linguale) - STRING interaction network
"Slin_1263" - Xylose isomerase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1263Xylose isomerase (297 aa)    
Predicted Functional Partners:
Slin_1264
Xylose isomerase (274 aa)
 
          0.906
Slin_1262
Dehydrogenase (1068 aa)
 
          0.807
Slin_0970
Oxidoreductase domain-containing protein (385 aa)
 
   
  0.792
Slin_3435
Oxidoreductase domain-containing protein (381 aa)
 
   
  0.734
Slin_0047
Oxidoreductase domain-containing protein (471 aa)
 
   
  0.711
Slin_4732
Oxidoreductase domain-containing protein (427 aa)
 
   
  0.710
Slin_2839
Oxidoreductase domain-containing protein (434 aa)
 
   
  0.704
Slin_4070
Oxidoreductase domain-containing protein (734 aa)
   
   
  0.702
Slin_1843
Oxidoreductase domain-containing protein (447 aa)
 
   
  0.682
Slin_1260
Alcohol dehydrogenase zinc-binding domain-containing protein (339 aa)
 
        0.680
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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