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Slin_1275 protein (Spirosoma linguale) - STRING interaction network
"Slin_1275" - RagB/SusD domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1275RagB/SusD domain-containing protein (460 aa)    
Predicted Functional Partners:
Slin_1274
TonB-dependent receptor plug (1066 aa)
 
          0.967
Slin_6567
TonB-dependent receptor plug (1155 aa)
 
          0.787
Slin_4042
TonB-dependent receptor (1026 aa)
 
          0.786
Slin_0106
TonB-dependent receptor plug (1161 aa)
 
          0.786
Slin_6286
TonB-dependent receptor plug (1168 aa)
 
          0.783
Slin_4782
TonB-dependent receptor (1144 aa)
 
          0.783
Slin_5655
TonB-dependent receptor plug (1164 aa)
 
          0.782
Slin_0441
TonB-dependent receptor plug (1034 aa)
 
          0.781
Slin_6433
TonB-dependent receptor plug (1013 aa)
 
          0.779
Slin_6053
TonB-dependent receptor plug (1006 aa)
 
          0.779
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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