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Slin_1280 protein (Spirosoma linguale) - STRING interaction network
"Slin_1280" - Penicillin-binding protein transpeptidase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1280Penicillin-binding protein transpeptidase (1323 aa)    
Predicted Functional Partners:
Slin_1283
Protein serine/threonine phosphatase (482 aa)
 
   
  0.925
Slin_1281
Serine/threonine protein kinase (429 aa)
 
 
 
  0.885
Slin_4738
Peptidoglycan glycosyltransferase (709 aa)
 
 
  0.873
Slin_1282
Serine/threonine protein kinase (517 aa)
 
 
 
  0.871
Slin_3202
Peptidoglycan glycosyltransferase (654 aa)
   
 
  0.838
Slin_2266
Alanine racemase (835 aa)
 
 
  0.760
Slin_4152
Cyanophycin synthetase (895 aa)
   
 
  0.743
Slin_5925
MreB/Mrl family cell shape determining protein (341 aa)
   
 
  0.742
Slin_6494
3-hydroxyacyl-ACP dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis (464 aa)
   
 
  0.699
Slin_6217
40-residue YVTN family beta-propeller repeat-containing protein (829 aa)
   
          0.699
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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