STRINGSTRING
rho protein (Spirosoma linguale) - STRING interaction network
"rho" - Transcription termination factor Rho in Spirosoma linguale
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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Score
rhoTranscription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho’s RNA-dependent ATPase activity, and release of the mRNA from the DNA template (750 aa)    
Predicted Functional Partners:
nusG
NusG antitermination factor; Participates in transcription elongation, termination and antitermination (186 aa)
   
 
  0.924
Slin_5663
RNA binding S1 domain-containing protein (595 aa)
 
   
  0.843
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1271 aa)
 
 
  0.783
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1449 aa)
 
   
  0.743
Slin_0543
DNA polymerase I (1024 aa)
   
   
  0.721
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan (402 aa)
 
        0.714
ctc
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance (188 aa)
 
   
  0.711
clpX
Sigma 54 interacting domain-containing protein; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP (410 aa)
 
 
 
  0.711
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination (414 aa)
   
   
  0.710
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (708 aa)
   
   
  0.693
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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