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Slin_1301 protein (Spirosoma linguale) - STRING interaction network
"Slin_1301" - Electron transporter SCO1/SenC in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1301Electron transporter SCO1/SenC (223 aa)    
Predicted Functional Partners:
Slin_1300
Cytochrome C class I (139 aa)
         
  0.877
Slin_1302
Hypothetical protein (151 aa)
              0.860
Slin_5678
Hypothetical protein (180 aa)
          0.804
Slin_1303
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA (557 aa)
              0.708
Slin_5670
Cytochrome C oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) (373 aa)
 
 
 
  0.694
Slin_1863
Redoxin (409 aa)
 
 
  0.631
Slin_2725
Redoxin (168 aa)
 
 
  0.601
Slin_5669
Hypothetical protein (436 aa)
 
          0.587
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group (292 aa)
 
   
  0.579
Slin_5675
Cytochrome C oxidase subunit III (265 aa)
 
     
  0.579
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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