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Slin_1313 protein (Spirosoma linguale) - STRING interaction network
"Slin_1313" - Short-chain dehydrogenase/reductase SDR in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1313Short-chain dehydrogenase/reductase SDR (262 aa)    
Predicted Functional Partners:
Slin_1312
Hypothetical protein (169 aa)
              0.859
Slin_1393
Aminoglycoside phosphotransferase (363 aa)
 
          0.764
Slin_1392
acyl-CoA dehydrogenase domain-containing protein (424 aa)
 
          0.699
Slin_5557
Short-chain dehydrogenase/reductase SDR (272 aa)
 
 
   
0.685
Slin_3152
Short-chain dehydrogenase/reductase SDR (250 aa)
 
 
   
0.668
Slin_6274
Short-chain dehydrogenase/reductase SDR (279 aa)
 
 
      0.636
Slin_2354
Alcohol dehydrogenase zinc-binding domain-containing protein (325 aa)
 
          0.609
Slin_1314
Hypothetical protein (398 aa)
              0.589
Slin_3188
Short-chain dehydrogenase/reductase SDR (265 aa)
 
      0.582
Slin_3808
Short-chain dehydrogenase/reductase SDR (248 aa)
 
   
0.534
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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