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Slin_1318 protein (Spirosoma linguale) - STRING interaction network
"Slin_1318" - ECF subfamily RNA polymerase sigma-24 subunit in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1318ECF subfamily RNA polymerase sigma-24 subunit (183 aa)    
Predicted Functional Partners:
Slin_1319
Hypothetical protein (110 aa)
 
          0.965
Slin_1317
Hypothetical protein (85 aa)
              0.576
Slin_3339
ECF subfamily RNA polymerase sigma-24 subunit (172 aa)
 
          0.560
Slin_0637
Hypothetical protein (1066 aa)
   
          0.533
Slin_1288
ECF subfamily RNA polymerase sigma-24 subunit (183 aa)
   
          0.509
Slin_0307
ECF subfamily RNA polymerase sigma-24 subunit (186 aa)
   
          0.481
Slin_4745
ECF subfamily RNA polymerase sigma-24 subunit (202 aa)
   
          0.466
Slin_0594
Hypothetical protein (1053 aa)
   
          0.461
Slin_1316
Glutamate--cysteine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity (366 aa)
              0.433
Slin_6609
ECF subfamily RNA polymerase sigma-24 subunit (180 aa)
   
          0.411
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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