STRINGSTRING
Slin_1354 protein (Spirosoma linguale) - STRING interaction network
"Slin_1354" - Fatty acid desaturase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1354Fatty acid desaturase (271 aa)    
Predicted Functional Partners:
Slin_3564
Fatty acid desaturase (249 aa)
   
   
 
0.807
Slin_4583
acyl-ACP desaturase (325 aa)
     
 
    0.802
Slin_1353
Hypothetical protein (219 aa)
              0.591
Slin_3371
Hypothetical protein (267 aa)
   
          0.508
Slin_4531
Vitamin K-dependent gamma-carboxylase (449 aa)
   
          0.473
Slin_2495
Hypothetical protein (204 aa)
   
          0.473
Slin_1352
Hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (239 aa)
              0.469
Slin_0846
Metallophosphoesterase (371 aa)
   
          0.461
Slin_4518
Hypothetical protein (451 aa)
   
          0.455
Slin_0372
Major facilitator superfamily protein (416 aa)
   
        0.442
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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