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Slin_1389 protein (Spirosoma linguale) - STRING interaction network
"Slin_1389" - N-acetyltransferase GCN5 in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1389N-acetyltransferase GCN5 (150 aa)    
Predicted Functional Partners:
Slin_1390
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil (348 aa)
              0.661
Slin_1388
Glycosyl transferase family protein (759 aa)
   
        0.536
Slin_1387
Hypothetical protein (122 aa)
              0.518
Slin_1391
Pyridoxal-5’-phosphate-dependent protein subunit beta (306 aa)
              0.506
Slin_2483
Histone deacetylase (300 aa)
   
 
  0.456
Slin_4538
Hypothetical protein (225 aa)
   
      0.405
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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