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Slin_1391 protein (Spirosoma linguale) - STRING interaction network
"Slin_1391" - Pyridoxal-5'-phosphate-dependent protein subunit beta in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1391Pyridoxal-5’-phosphate-dependent protein subunit beta (306 aa)    
Predicted Functional Partners:
Slin_1390
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil (348 aa)
   
        0.675
Slin_1392
acyl-CoA dehydrogenase domain-containing protein (424 aa)
 
          0.657
Slin_1393
Aminoglycoside phosphotransferase (363 aa)
 
          0.653
Slin_1364
Hypothetical protein (116 aa)
   
        0.563
Slin_1389
N-acetyltransferase GCN5 (150 aa)
              0.506
Slin_0254
Fructose-bisphosphate aldolase (359 aa)
 
          0.503
Slin_0586
ATPase AAA (324 aa)
   
          0.427
Slin_1599
ATP-dependent Clp protease adaptor protein ClpS (92 aa)
   
          0.413
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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