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Slin_1404 protein (Spirosoma linguale) - STRING interaction network
"Slin_1404" - Endo-1,4-beta-xylanase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1404Endo-1,4-beta-xylanase (370 aa)    
Predicted Functional Partners:
Slin_0353
Xylan 1,4-beta-xylosidase (346 aa)
   
  0.884
Slin_6197
Alpha-glucuronidase (707 aa)
 
     
  0.859
Slin_1423
Xylan 1,4-beta-xylosidase (558 aa)
   
  0.840
Slin_1420
Glycoside hydrolase family protein (530 aa)
 
   
  0.822
Slin_1718
Hypothetical protein (903 aa)
 
        0.773
Slin_1422
Hypothetical protein (760 aa)
 
        0.724
Slin_1405
AraC family transcriptional regulator (305 aa)
              0.640
Slin_1406
Short-chain dehydrogenase/reductase SDR (267 aa)
              0.631
Slin_1418
Hypothetical protein (284 aa)
          0.619
Slin_1407
Esterase (640 aa)
          0.600
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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