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Slin_1424 protein (Spirosoma linguale) - STRING interaction network
"Slin_1424" - RagB/SusD domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1424RagB/SusD domain-containing protein (604 aa)    
Predicted Functional Partners:
Slin_1425
TonB-dependent receptor plug (1168 aa)
 
          0.958
Slin_0441
TonB-dependent receptor plug (1034 aa)
   
          0.776
Slin_2627
TonB-dependent receptor plug (1117 aa)
   
          0.771
Slin_4810
TonB-dependent receptor plug (1073 aa)
   
          0.761
Slin_4206
TonB-dependent receptor plug (1023 aa)
   
          0.759
Slin_4811
Hypothetical protein (510 aa)
   
          0.757
Slin_3035
Hypothetical protein (533 aa)
   
          0.756
Slin_5655
TonB-dependent receptor plug (1164 aa)
   
          0.749
Slin_2454
TonB-dependent receptor plug (1024 aa)
   
          0.748
Slin_0983
DoxX family protein (142 aa)
   
          0.748
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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