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Slin_1426 protein (Spirosoma linguale) - STRING interaction network
"Slin_1426" - anti-FecI sigma factor FecR in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1426anti-FecI sigma factor FecR (361 aa)    
Predicted Functional Partners:
Slin_1219
anti-FecI sigma factor FecR (333 aa)
   
          0.778
Slin_1218
ECF subfamily RNA polymerase sigma-24 subunit (227 aa)
   
          0.763
Slin_4780
ECF subfamily RNA polymerase sigma-24 subunit (194 aa)
   
          0.730
Slin_0104
LuxR family transcriptional regulator (207 aa)
   
          0.730
Slin_6284
ECF subfamily RNA polymerase sigma-24 subunit (227 aa)
   
          0.721
Slin_1425
TonB-dependent receptor plug (1168 aa)
 
          0.681
Slin_4981
ECF subfamily RNA polymerase sigma-24 subunit (193 aa)
   
          0.681
Slin_1427
ECF subfamily RNA polymerase sigma-24 subunit (201 aa)
              0.669
Slin_6565
ECF subfamily RNA polymerase sigma-24 subunit (196 aa)
   
          0.628
Slin_0743
Hypothetical protein (476 aa)
   
          0.625
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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