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Slin_1461 protein (Spirosoma linguale) - STRING interaction network
"Slin_1461" - Exonuclease V subunit alpha in Spirosoma linguale
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1461Exonuclease V subunit alpha (496 aa)    
Predicted Functional Partners:
Slin_1797
Exodeoxyribonuclease V (1120 aa)
   
  0.967
Slin_5436
Hypothetical protein (505 aa)
   
          0.698
Slin_5948
Hypothetical protein (204 aa)
   
          0.671
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination (230 aa)
   
          0.664
Slin_1460
Hypothetical protein (199 aa)
              0.652
Slin_5854
Outer membrane lipoprotein carrier protein LolA (213 aa)
   
          0.651
Slin_3922
Hypothetical protein; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (126 aa)
   
          0.639
Slin_2316
Hypothetical protein (179 aa)
   
          0.629
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (894 aa)
   
 
  0.624
Slin_1462
Signal transduction protein with CBS domains (145 aa)
   
        0.623
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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