STRINGSTRING
Slin_1480 protein (Spirosoma linguale) - STRING interaction network
"Slin_1480" - AraC family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1480AraC family transcriptional regulator (288 aa)    
Predicted Functional Partners:
Slin_1479
Dihydrodipicolinate synthetase (304 aa)
 
          0.755
Slin_2332
AraC family transcriptional regulator (311 aa)
   
          0.747
Slin_5371
AraC family transcriptional regulator (326 aa)
   
          0.726
Slin_4328
AraC family transcriptional regulator (310 aa)
   
          0.712
Slin_1477
FAD dependent oxidoreductase (420 aa)
 
          0.678
Slin_1478
4-hydroxyproline epimerase; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). Is likely involved in a degradation pathway that converts t4LHyp to alpha- ketoglutarate. Displays no proline racemase activity (334 aa)
              0.641
Slin_3777
AraC family transcriptional regulator (294 aa)
   
          0.541
Slin_2823
AraC family transcriptional regulator (285 aa)
   
          0.502
Slin_5414
AraC family transcriptional regulator (296 aa)
   
          0.488
Slin_6599
AraC family transcriptional regulator (193 aa)
   
          0.439
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (6%) [HD]