STRINGSTRING
Slin_1489 protein (Spirosoma linguale) - STRING interaction network
"Slin_1489" - Pentapeptide repeat-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1489Pentapeptide repeat-containing protein (187 aa)    
Predicted Functional Partners:
Slin_1488
DSBA oxidoreductase (234 aa)
              0.792
Slin_1490
Hypothetical protein (348 aa)
 
          0.683
Slin_3994
TetR family transcriptional regulator (238 aa)
   
          0.494
Slin_5684
Epimerase (276 aa)
   
        0.485
Slin_4342
Metallophosphoesterase (313 aa)
       
      0.485
Slin_4341
5’-nucleotidase domain-containing protein (246 aa)
       
      0.485
Slin_2270
Hypothetical protein (464 aa)
   
          0.485
Slin_6177
Beta-lactamase (470 aa)
   
      0.478
Slin_5172
Beta-lactamase (466 aa)
   
      0.478
Slin_4240
Beta-lactamase (286 aa)
   
      0.442
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (7%) [HD]