STRINGSTRING
rtcB protein (Spirosoma linguale) - STRING interaction network
"rtcB" - Hypothetical protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtcBHypothetical protein (512 aa)    
Predicted Functional Partners:
Slin_1491
Hypothetical protein (368 aa)
 
   
  0.849
Slin_1490
Hypothetical protein (348 aa)
 
          0.739
kptA
Phosphotransferase KptA/Tpt1; Removes the 2’-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1’’-2’’-cyclic phosphate (APPR>P). May function as an ADP- ribosylase (182 aa)
 
        0.704
Slin_5691
DEAD/DEAH box helicase (475 aa)
     
    0.659
Slin_3331
DEAD/DEAH box helicase (441 aa)
     
    0.659
Slin_3330
DEAD/DEAH box helicase (447 aa)
     
    0.659
Slin_3329
DEAD/DEAH box helicase (380 aa)
     
    0.659
Slin_2449
DEAD/DEAH box helicase (485 aa)
     
    0.659
Slin_1766
DEAD/DEAH box helicase (535 aa)
     
    0.659
Slin_0250
DEAD/DEAH box helicase (643 aa)
     
    0.659
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (9%) [HD]