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Slin_1511 protein (Spirosoma linguale) - STRING interaction network
"Slin_1511" - TonB-dependent receptor in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1511TonB-dependent receptor (772 aa)    
Predicted Functional Partners:
Slin_1516
Heavy metal transport/detoxification protein (121 aa)
 
          0.889
Slin_1512
AraC family transcriptional regulator (188 aa)
              0.861
Slin_1510
Hypothetical protein (177 aa)
              0.628
Slin_2000
XRE family transcriptional regulator (172 aa)
   
          0.625
Slin_0364
Hypothetical protein (683 aa)
   
          0.625
Slin_1887
Kelch repeat-containing protein (358 aa)
   
          0.587
Slin_1599
ATP-dependent Clp protease adaptor protein ClpS (92 aa)
   
          0.586
Slin_1509
Hypothetical protein (172 aa)
              0.554
Slin_3616
Hypothetical protein (359 aa)
   
          0.546
Slin_5683
Hypothetical protein (330 aa)
   
          0.540
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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