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Slin_1516 protein (Spirosoma linguale) - STRING interaction network
"Slin_1516" - Heavy metal transport/detoxification protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1516Heavy metal transport/detoxification protein (121 aa)    
Predicted Functional Partners:
Slin_1511
TonB-dependent receptor (772 aa)
 
          0.889
Slin_5969
Gliding motility-associated lipoprotein GldH (158 aa)
   
          0.707
Slin_1515
Hypothetical protein (469 aa)
              0.657
Slin_5341
Hypothetical protein (300 aa)
   
          0.641
Slin_5735
Hypothetical protein (275 aa)
   
          0.637
Slin_3865
Hypothetical protein (822 aa)
   
          0.628
Slin_1514
Hypothetical protein (312 aa)
              0.608
Slin_4054
Cold-shock DNA-binding domain-containing protein (148 aa)
   
          0.604
Slin_1887
Kelch repeat-containing protein (358 aa)
   
          0.603
Slin_5110
Hypothetical protein (311 aa)
   
          0.571
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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