STRINGSTRING
Slin_1539 protein (Spirosoma linguale) - STRING interaction network
"Slin_1539" - AraC family transcriptional regulator in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1539AraC family transcriptional regulator (293 aa)    
Predicted Functional Partners:
Slin_1534
4-hydroxybenzoate 3-monooxygenase (405 aa)
 
   
  0.857
Slin_1537
Protocatechuate 3,4-dioxygenase subunit alpha (173 aa)
 
     
  0.722
Slin_1538
Protocatechuate 3,4-dioxygenase subunit beta (235 aa)
 
     
  0.719
Slin_1536
3-carboxy-cis,cis-muconate cycloisomerase (438 aa)
 
   
  0.690
Slin_1535
3-oxoadipate enol-lactonase (373 aa)
 
 
 
  0.658
Slin_2643
AraC family transcriptional regulator (305 aa)
   
          0.614
Slin_1540
Hypothetical protein (198 aa)
              0.601
Slin_1541
RES domain-containing protein (158 aa)
              0.550
Slin_1533
3-oxoacid CoA-transferase subunit B (447 aa)
         
  0.468
Slin_2199
AraC family transcriptional regulator (264 aa)
   
          0.446
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (7%) [HD]