STRINGSTRING
Slin_1547 protein (Spirosoma linguale) - STRING interaction network
"Slin_1547" - Hypothetical protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1547Hypothetical protein (384 aa)    
Predicted Functional Partners:
Slin_1548
Catechol 2,3-dioxygenase (330 aa)
 
   
  0.845
Slin_1549
Hypothetical protein (156 aa)
              0.793
Slin_1542
Monooxygenase FAD-binding protein (374 aa)
   
     
  0.734
Slin_1543
Cyclase family protein (255 aa)
 
          0.722
Slin_1550
AraC family transcriptional regulator (306 aa)
 
 
 
  0.648
Slin_2116
Monooxygenase FAD-binding protein (384 aa)
 
     
  0.624
Slin_4024
6-phosphogluconate dehydrogenase (263 aa)
   
          0.612
Slin_1560
AMP-dependent synthetase and ligase (606 aa)
 
   
  0.592
menD
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylic acid synthase/2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) (582 aa)
   
   
  0.574
Slin_4023
Dimethylmenaquinone methyltransferase (198 aa)
   
        0.547
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (10%) [HD]