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Slin_1560 protein (Spirosoma linguale) - STRING interaction network
"Slin_1560" - AMP-dependent synthetase and ligase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1560AMP-dependent synthetase and ligase (606 aa)    
Predicted Functional Partners:
Slin_1561
enoyl-CoA hydratase/isomerase (258 aa)
 
 
  0.944
Slin_1557
Amidohydrolase 2 (289 aa)
 
        0.912
Slin_1562
Hypothetical protein (180 aa)
 
          0.857
Slin_6109
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein (718 aa)
   
 
  0.741
Slin_4424
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein (811 aa)
   
 
  0.741
Slin_1559
vitamin-B12 independent methionine synthase (369 aa)
              0.716
Slin_1558
Hypothetical protein (403 aa)
              0.707
Slin_1534
4-hydroxybenzoate 3-monooxygenase (405 aa)
 
        0.694
Slin_1547
Hypothetical protein (384 aa)
 
   
  0.592
Slin_5641
butyryl-CoA dehydrogenase (379 aa)
   
   
  0.529
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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