STRINGSTRING
Slin_1620 protein (Spirosoma linguale) - STRING interaction network
"Slin_1620" - Major facilitator superfamily protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1620Major facilitator superfamily protein (419 aa)    
Predicted Functional Partners:
Slin_1621
Hypothetical protein (136 aa)
              0.859
Slin_0526
Hypothetical protein (354 aa)
   
          0.552
Slin_5238
Hypothetical protein (150 aa)
   
          0.546
Slin_1619
Hypothetical protein (139 aa)
              0.540
Slin_4773
Cytochrome C class I (669 aa)
 
          0.502
Slin_5643
Hypothetical protein (145 aa)
   
          0.438
Slin_1805
Sugar (pentulose and hexulose) kinase-like protein (474 aa)
   
          0.426
Slin_5161
Hypothetical protein (428 aa)
   
          0.418
Slin_1208
ECF subfamily RNA polymerase sigma-24 subunit (195 aa)
   
          0.417
Slin_1663
Lysine exporter protein LysE/YggA (212 aa)
   
          0.407
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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