STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1623PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bph:Bphy_3834 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter. (735 aa)    
Predicted Functional Partners:
Slin_4232
KEGG: hypothetical protein.
 
 
 0.860
Slin_0782
KEGG: hypothetical protein.
 
 
 0.859
Slin_4700
KEGG: hypothetical protein.
 
 
 0.859
Slin_0889
Hypothetical protein; KEGG: bxe:Bxe_C1144 anibiotic ABC transporter efflux pump.
 
 
 0.858
Slin_1811
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nis:NIS_1034 ABC transporter, ATP-binding protein.
 
     
0.853
Slin_1626
KEGG: bav:BAV0540 membrane protein.
 
   
 0.796
Slin_1624
PFAM: beta-lactamase domain protein; KEGG: msl:Msil_0410 beta-lactamase domain protein.
       0.773
Slin_1625
Hypothetical protein.
       0.773
Slin_0774
PFAM: Vitamin K epoxide reductase; KEGG: vsp:VS_II1178 putative outer membrane protein.
 
     0.767
Slin_4705
PFAM: Lanthionine synthetase C family protein.
 
   
 0.758
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.