STRINGSTRING
Slin_1643 protein (Spirosoma linguale) - STRING interaction network
"Slin_1643" - Rhodopsin in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1643Rhodopsin (250 aa)    
Predicted Functional Partners:
Slin_0447
Lycopene beta and epsilon cyclase (393 aa)
 
     
  0.714
Slin_3019
Hypothetical protein (197 aa)
   
          0.712
Slin_0262
Xaa-Pro aminopeptidase (468 aa)
   
          0.627
Slin_1580
Pyridoxamine 5’-phosphate oxidase-like FMN-binding protein (212 aa)
   
          0.577
Slin_5960
Phytoene desaturase (490 aa)
 
     
  0.559
Slin_0600
Deoxyribodipyrimidine photo-lyase (561 aa)
   
          0.548
Slin_0654
Amine oxidase (438 aa)
 
     
  0.532
Slin_1644
Hypothetical protein (319 aa)
              0.490
Slin_1124
Hypothetical protein (831 aa)
   
          0.481
Slin_4312
LysR family transcriptional regulator (307 aa)
   
          0.473
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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