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Slin_1668 protein (Spirosoma linguale) - STRING interaction network
"Slin_1668" - phytanoyl-CoA dioxygenase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_1668phytanoyl-CoA dioxygenase (315 aa)    
Predicted Functional Partners:
Slin_1667
AraC family transcriptional regulator (281 aa)
 
          0.800
Slin_4084
Hypothetical protein (917 aa)
   
          0.624
Slin_5453
Hypothetical protein (924 aa)
   
          0.589
Slin_3037
Hypothetical protein (850 aa)
   
          0.551
Slin_1666
Hypothetical protein (50 aa)
              0.548
Slin_3992
Hypothetical protein (532 aa)
   
          0.509
surE
Stationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5’-monophosphates (258 aa)
              0.493
Slin_1913
Hypothetical protein (215 aa)
   
          0.490
Slin_4506
Hypothetical protein (436 aa)
   
          0.486
Slin_1825
Hypothetical protein (411 aa)
   
          0.486
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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